|
typedef
AffineDTITransformType::Pointer | AffineDTITransformPointer |
|
typedef
itk::AffineDTITransform
< typename elx::TransformBase
< TElastix >::CoordRepType,
elx::TransformBase< TElastix >
::FixedImageDimension > | AffineDTITransformType |
|
typedef
Superclass2::CombinationTransformType | CombinationTransformType |
|
typedef
Superclass2::ConfigurationPointer | ConfigurationPointer |
|
typedef
Superclass2::ConfigurationType | ConfigurationType |
|
typedef itk::SmartPointer
< const Self > | ConstPointer |
|
typedef Superclass2::CoordRepType | CoordRepType |
|
typedef
FixedImageType::DirectionType | DirectionType |
|
typedef Superclass2::ElastixPointer | ElastixPointer |
|
typedef Superclass2::ElastixType | ElastixType |
|
typedef Superclass2::FixedImageType | FixedImageType |
|
typedef FixedImageType::IndexType | IndexType |
|
typedef IndexType::IndexValueType | IndexValueType |
|
typedef
Superclass1::InputCovariantVectorType | InputCovariantVectorType |
|
typedef Superclass1::InputPointType | InputPointType |
|
typedef
Superclass1::InputVectorType | InputVectorType |
|
typedef
Superclass1::InputVnlVectorType | InputVnlVectorType |
|
typedef Superclass2::ITKBaseType | ITKBaseType |
|
typedef Superclass1::JacobianType | JacobianType |
|
typedef
Superclass2::MovingImageType | MovingImageType |
|
typedef
Superclass1::NumberOfParametersType | NumberOfParametersType |
|
typedef
AffineDTITransformType::OffsetType | OffsetType |
|
typedef
Superclass1::OutputCovariantVectorType | OutputCovariantVectorType |
|
typedef
Superclass1::OutputPointType | OutputPointType |
|
typedef
Superclass1::OutputVectorType | OutputVectorType |
|
typedef
Superclass1::OutputVnlVectorType | OutputVnlVectorType |
|
typedef Superclass1::ParametersType | ParametersType |
|
typedef itk::SmartPointer< Self > | Pointer |
|
typedef FixedImageType::PointType | PointType |
|
typedef FixedImageType::RegionType | RegionType |
|
typedef
Superclass2::RegistrationPointer | RegistrationPointer |
|
typedef
Superclass2::RegistrationType | RegistrationType |
|
typedef Superclass1::ScalarType | ScalarType |
|
typedef Superclass2::ScalesType | ScalesType |
|
typedef AffineDTITransformElastix | Self |
|
typedef FixedImageType::SizeType | SizeType |
|
typedef FixedImageType::SpacingType | SpacingType |
|
typedef
itk::AdvancedCombinationTransform
< typename elx::TransformBase
< TElastix >::CoordRepType,
elx::TransformBase< TElastix >
::FixedImageDimension > | Superclass1 |
|
typedef elx::TransformBase
< TElastix > | Superclass2 |
|
typedef
TransformInitializerType::Pointer | TransformInitializerPointer |
|
typedef
itk::CenteredTransformInitializer
< AffineDTITransformType,
FixedImageType,
MovingImageType > | TransformInitializerType |
|
typedef SmartPointer< const Self > | ConstPointer |
|
typedef
CurrentTransformType::ConstPointer | CurrentTransformConstPointer |
|
typedef
CurrentTransformType::InverseTransformBasePointer | CurrentTransformInverseTransformBasePointer |
|
typedef
CurrentTransformType::InverseTransformBaseType | CurrentTransformInverseTransformBaseType |
|
typedef
CurrentTransformType::Pointer | CurrentTransformPointer |
|
typedef Superclass | CurrentTransformType |
|
typedef void(Self::* | GetJacobianOfSpatialHessianFunctionPointer )(const InputPointType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const |
|
typedef void(Self::* | GetJacobianOfSpatialHessianFunctionPointer2 )(const InputPointType &, SpatialHessianType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const |
|
typedef void(Self::* | GetJacobianOfSpatialJacobianFunctionPointer )(const InputPointType &, JacobianOfSpatialJacobianType &, NonZeroJacobianIndicesType &) const |
|
typedef void(Self::* | GetJacobianOfSpatialJacobianFunctionPointer2 )(const InputPointType &, SpatialJacobianType &, JacobianOfSpatialJacobianType &, NonZeroJacobianIndicesType &) const |
|
typedef void(Self::* | GetSparseJacobianFunctionPointer )(const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const |
|
typedef void(Self::* | GetSpatialHessianFunctionPointer )(const InputPointType &, SpatialHessianType &) const |
|
typedef void(Self::* | GetSpatialJacobianFunctionPointer )(const InputPointType &, SpatialJacobianType &) const |
|
typedef
InitialTransformType::ConstPointer | InitialTransformConstPointer |
|
typedef
InitialTransformType::InverseTransformBasePointer | InitialTransformInverseTransformBasePointer |
|
typedef
InitialTransformType::InverseTransformBaseType | InitialTransformInverseTransformBaseType |
|
typedef
InitialTransformType::Pointer | InitialTransformPointer |
|
typedef Superclass | InitialTransformType |
|
typedef
Superclass::InputCovariantVectorType | InputCovariantVectorType |
|
typedef Superclass::InputPointType | InputPointType |
|
typedef Superclass::InputVectorType | InputVectorType |
|
typedef
Superclass::InputVnlVectorType | InputVnlVectorType |
|
typedef
Superclass::InternalMatrixType | InternalMatrixType |
|
typedef
Superclass::InverseTransformBasePointer | InverseTransformBasePointer |
|
typedef
Superclass::InverseTransformBaseType | InverseTransformBaseType |
|
typedef
Superclass::JacobianOfSpatialHessianType | JacobianOfSpatialHessianType |
|
typedef
Superclass::JacobianOfSpatialJacobianType | JacobianOfSpatialJacobianType |
|
typedef Superclass::JacobianType | JacobianType |
|
typedef
Superclass::NonZeroJacobianIndicesType | NonZeroJacobianIndicesType |
|
typedef
Superclass::NumberOfParametersType | NumberOfParametersType |
|
typedef
Superclass::OutputCovariantVectorType | OutputCovariantVectorType |
|
typedef Superclass::OutputPointType | OutputPointType |
|
typedef
Superclass::OutputVectorType | OutputVectorType |
|
typedef
Superclass::OutputVnlVectorType | OutputVnlVectorType |
|
typedef Superclass::ParametersType | ParametersType |
|
typedef SmartPointer< Self > | Pointer |
|
typedef Superclass::ScalarType | ScalarType |
|
typedef
AdvancedCombinationTransform | Self |
|
typedef
Superclass::SpatialHessianType | SpatialHessianType |
|
typedef
Superclass::SpatialJacobianType | SpatialJacobianType |
|
typedef AdvancedTransform
< elx::TransformBase< TElastix >
::CoordRepType, NDimensions,
NDimensions > | Superclass |
|
typedef
Superclass::TransformCategoryType | TransformCategoryType |
|
typedef OutputPointType(Self::* | TransformPointFunctionPointer )(const InputPointType &) const |
|
typedef Superclass::TransformType | TransformType |
|
typedef TransformType::ConstPointer | TransformTypeConstPointer |
|
typedef TransformType::Pointer | TransformTypePointer |
|
typedef SmartPointer< const Self > | ConstPointer |
|
typedef
Superclass::InputCovariantVectorType | InputCovariantVectorType |
|
typedef Superclass::InputPointType | InputPointType |
|
typedef Superclass::InputVectorType | InputVectorType |
|
typedef
Superclass::InputVnlVectorType | InputVnlVectorType |
|
typedef
SpatialJacobianType::InternalMatrixType | InternalMatrixType |
|
typedef
Superclass::InverseTransformBasePointer | InverseTransformBasePointer |
|
typedef
Superclass::InverseTransformBaseType | InverseTransformBaseType |
|
typedef std::vector
< SpatialHessianType > | JacobianOfSpatialHessianType |
|
typedef std::vector
< SpatialJacobianType > | JacobianOfSpatialJacobianType |
|
typedef Superclass::JacobianType | JacobianType |
|
typedef std::vector< unsigned
long > | NonZeroJacobianIndicesType |
|
typedef
Superclass::NumberOfParametersType | NumberOfParametersType |
|
typedef
Superclass::OutputCovariantVectorType | OutputCovariantVectorType |
|
typedef Superclass::OutputPointType | OutputPointType |
|
typedef
Superclass::OutputVectorType | OutputVectorType |
|
typedef
Superclass::OutputVnlVectorType | OutputVnlVectorType |
|
typedef Superclass::ParametersType | ParametersType |
|
typedef
Superclass::ParametersValueType | ParametersValueType |
|
typedef SmartPointer< Self > | Pointer |
|
typedef Superclass::ScalarType | ScalarType |
|
typedef AdvancedTransform | Self |
|
typedef FixedArray< Matrix
< ScalarType,
InputSpaceDimension,
InputSpaceDimension >
, OutputSpaceDimension > | SpatialHessianType |
|
typedef Matrix< ScalarType,
OutputSpaceDimension,
InputSpaceDimension > | SpatialJacobianType |
|
typedef Transform
< elx::TransformBase< TElastix >
::CoordRepType,
NInputDimensions,
NOutputDimensions > | Superclass |
|
typedef Transform
< elx::TransformBase< TElastix >
::CoordRepType,
NInputDimensions,
NOutputDimensions > | TransformType |
|
typedef TransformType::ConstPointer | TransformTypeConstPointer |
|
typedef TransformType::Pointer | TransformTypePointer |
|
typedef
itk::AdvancedCombinationTransform
< CoordRepType,
itkGetStaticConstMacro(FixedImageDimension) > | CombinationTransformType |
|
typedef
ConfigurationType::CommandLineArgumentMapType | CommandLineArgumentMapType |
|
typedef
ConfigurationType::CommandLineEntryType | CommandLineEntryType |
|
typedef ComponentDatabase | ComponentDatabaseType |
|
typedef
ComponentDatabaseType::ComponentDescriptionType | ComponentDescriptionType |
|
typedef
Superclass::ConfigurationPointer | ConfigurationPointer |
|
typedef
Superclass::ConfigurationType | ConfigurationType |
|
typedef ElastixType::CoordRepType | CoordRepType |
|
typedef Superclass::ElastixPointer | ElastixPointer |
|
typedef Superclass::ElastixType | ElastixType |
|
typedef ElastixType::FixedImageType | FixedImageType |
|
typedef
CombinationTransformType::InitialTransformType | InitialTransformType |
|
typedef ITKBaseType::InputPointType | InputPointType |
|
typedef itk::AdvancedTransform
< CoordRepType,
itkGetStaticConstMacro(FixedImageDimension),
itkGetStaticConstMacro(MovingImageDimension) > | ITKBaseType |
|
typedef
RegistrationType::ITKBaseType | ITKRegistrationType |
|
typedef
ElastixType::MovingImageType | MovingImageType |
|
typedef itk::Object | ObjectType |
|
typedef
ITKRegistrationType::OptimizerType | OptimizerType |
|
typedef
ITKBaseType::OutputPointType | OutputPointType |
|
typedef
ElastixType::ParameterMapType | ParameterMapType |
|
typedef ITKBaseType::ParametersType | ParametersType |
|
typedef elx::ProgressCommand | ProgressCommandType |
|
typedef
ComponentDatabase::PtrToCreator | PtrToCreator |
|
typedef
Superclass::RegistrationPointer | RegistrationPointer |
|
typedef
Superclass::RegistrationType | RegistrationType |
|
typedef OptimizerType::ScalesType | ScalesType |
|
typedef TransformBase | Self |
|
typedef BaseComponentSE< TElastix > | Superclass |
|
typedef ParametersType::ValueType | ValueType |
|
typedef
ElastixType::ConfigurationPointer | ConfigurationPointer |
|
typedef
ElastixType::ConfigurationType | ConfigurationType |
|
typedef ElastixType::Pointer | ElastixPointer |
|
typedef TElastix | ElastixType |
|
typedef RegistrationType * | RegistrationPointer |
|
typedef
ElastixType::RegistrationBaseType | RegistrationType |
|
typedef BaseComponentSE | Self |
|
typedef BaseComponent | Superclass |
|
|
virtual void | BeforeRegistration (void) |
|
| elxClassNameMacro ("AffineDTITransform") |
|
virtual const char * | GetClassName () const |
|
virtual void | InitializeTransform (void) |
|
| itkStaticConstMacro (SpaceDimension, unsigned int, Superclass2::FixedImageDimension) |
|
virtual void | ReadFromFile (void) |
|
virtual void | SetScales (void) |
|
virtual void | WriteToFile (const ParametersType ¶m) const |
|
virtual CurrentTransformType * | GetCurrentTransform () |
|
virtual const
CurrentTransformType * | GetCurrentTransform () |
|
virtual const ParametersType & | GetFixedParameters (void) const |
|
virtual bool | GetHasNonZeroSpatialHessian (void) const |
|
virtual InitialTransformType * | GetInitialTransform () |
|
virtual const
InitialTransformType * | GetInitialTransform () |
|
virtual bool | GetInverse (Self *inverse) const |
|
virtual void | GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
|
virtual void | GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
|
virtual void | GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
|
virtual void | GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
|
virtual void | GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
|
virtual const TransformTypePointer | GetNthTransform (SizeValueType n) const |
|
virtual NumberOfParametersType | GetNumberOfNonZeroJacobianIndices (void) const |
|
virtual NumberOfParametersType | GetNumberOfParameters (void) const |
|
virtual SizeValueType | GetNumberOfTransforms (void) const |
|
virtual const ParametersType & | GetParameters (void) const |
|
virtual void | GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const |
|
virtual void | GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const |
|
virtual TransformCategoryType | GetTransformCategory () const |
|
virtual bool | GetUseAddition () const |
|
virtual bool | GetUseComposition () const |
|
virtual bool | HasNonZeroJacobianOfSpatialHessian (void) const |
|
virtual bool | IsLinear (void) const |
|
| itkStaticConstMacro (SpaceDimension, unsigned int, NDimensions) |
|
virtual void | SetCurrentTransform (CurrentTransformType *_arg) |
|
virtual void | SetFixedParameters (const ParametersType &fixedParam) |
|
virtual void | SetInitialTransform (InitialTransformType *_arg) |
|
virtual void | SetParameters (const ParametersType ¶m) |
|
virtual void | SetParametersByValue (const ParametersType ¶m) |
|
virtual void | SetUseAddition (bool _arg) |
|
virtual void | SetUseComposition (bool _arg) |
|
virtual OutputCovariantVectorType | TransformCovariantVector (const InputCovariantVectorType &) const |
|
virtual OutputPointType | TransformPoint (const InputPointType &point) const |
|
virtual OutputVectorType | TransformVector (const InputVectorType &) const |
|
virtual OutputVnlVectorType | TransformVector (const InputVnlVectorType &) const |
|
virtual void | ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &) const |
|
virtual void | ComputeJacobianWithRespectToPosition (const InputPointType &, JacobianType &) const |
|
virtual bool | GetHasNonZeroJacobianOfSpatialHessian () const |
|
virtual void | GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const =0 |
|
virtual void | GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const =0 |
|
virtual void | GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const =0 |
|
virtual void | GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const =0 |
|
virtual void | GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const =0 |
|
virtual void | GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const =0 |
|
virtual void | GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const =0 |
|
| itkStaticConstMacro (InputSpaceDimension, unsigned int, NInputDimensions) |
|
| itkStaticConstMacro (OutputSpaceDimension, unsigned int, NOutputDimensions) |
|
virtual void | AfterRegistrationBase (void) |
|
virtual int | BeforeAllBase (void) |
|
virtual int | BeforeAllTransformix (void) |
|
virtual void | BeforeRegistrationBase (void) |
|
virtual void | ComputeDeterminantOfSpatialJacobian (void) const |
|
virtual void | ComputeSpatialJacobian (void) const |
|
virtual void | CreateTransformParametersMap (const ParametersType ¶m, ParameterMapType *paramsMap) const |
|
virtual const
CombinationTransformType * | GetAsCombinationTransform (void) const |
|
virtual CombinationTransformType * | GetAsCombinationTransform (void) |
|
virtual ITKBaseType * | GetAsITKBaseType (void) |
|
virtual const ITKBaseType * | GetAsITKBaseType (void) const |
|
virtual const
InitialTransformType * | GetInitialTransform (void) const |
|
virtual const char * | GetTransformParametersFileName () const |
|
| itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension) |
|
| itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension) |
|
virtual void | ReadInitialTransformFromFile (const char *transformParameterFileName) |
|
virtual void | ReadInitialTransformFromVector (const vcl_size_t index) |
|
virtual void | SetFinalParameters (void) |
|
virtual void | SetInitialTransform (InitialTransformType *_arg) |
|
virtual void | SetReadWriteTransformParameters (const bool _arg) |
|
virtual void | SetTransformParametersFileName (const char *filename) |
|
virtual void | TransformPoints (void) const |
|
virtual void | TransformPointsAllPoints (void) const |
|
virtual void | TransformPointsSomePoints (const std::string filename) const |
|
virtual void | TransformPointsSomePointsVTK (const std::string filename) const |
|
virtual void | WriteToFile (void) const |
|
virtual ConfigurationType * | GetConfiguration (void) const |
|
virtual ElastixType * | GetElastix (void) const |
|
virtual RegistrationPointer | GetRegistration (void) const |
|
virtual void | SetConfiguration (ConfigurationType *_arg) |
|
virtual void | SetElastix (ElastixType *_arg) |
|
virtual void | AfterEachIteration (void) |
|
virtual void | AfterEachIterationBase (void) |
|
virtual void | AfterEachResolution (void) |
|
virtual void | AfterEachResolutionBase (void) |
|
virtual void | AfterRegistration (void) |
|
virtual int | BeforeAll (void) |
|
virtual void | BeforeEachResolution (void) |
|
virtual void | BeforeEachResolutionBase (void) |
|
virtual const char * | elxGetClassName (void) const |
|
virtual const char * | GetComponentLabel (void) const |
|
virtual void | SetComponentLabel (const char *label, unsigned int idx) |
|
|
| AffineDTITransformElastix () |
|
virtual bool | ReadCenterOfRotationPoint (InputPointType &rotationPoint) const |
|
virtual | ~AffineDTITransformElastix () |
|
| AdvancedCombinationTransform () |
|
void | GetJacobianNoCurrentTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const |
|
void | GetJacobianNoInitialTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const |
|
void | GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
|
void | GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
|
void | GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
|
void | GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
|
void | GetJacobianOfSpatialHessianUseAddition (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
|
void | GetJacobianOfSpatialHessianUseAddition (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
|
void | GetJacobianOfSpatialHessianUseComposition (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
|
virtual void | GetJacobianOfSpatialHessianUseComposition (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
|
void | GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
|
void | GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
|
void | GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
|
void | GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
|
void | GetJacobianOfSpatialJacobianUseAddition (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
|
void | GetJacobianOfSpatialJacobianUseAddition (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
|
void | GetJacobianOfSpatialJacobianUseComposition (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
|
void | GetJacobianOfSpatialJacobianUseComposition (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const |
|
void | GetJacobianUseAddition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const |
|
void | GetJacobianUseComposition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const |
|
void | GetSpatialHessianNoCurrentTransform (const InputPointType &ipp, SpatialHessianType &sh) const |
|
void | GetSpatialHessianNoInitialTransform (const InputPointType &ipp, SpatialHessianType &sh) const |
|
void | GetSpatialHessianUseAddition (const InputPointType &ipp, SpatialHessianType &sh) const |
|
void | GetSpatialHessianUseComposition (const InputPointType &ipp, SpatialHessianType &sh) const |
|
void | GetSpatialJacobianNoCurrentTransform (const InputPointType &ipp, SpatialJacobianType &sj) const |
|
void | GetSpatialJacobianNoInitialTransform (const InputPointType &ipp, SpatialJacobianType &sj) const |
|
void | GetSpatialJacobianUseAddition (const InputPointType &ipp, SpatialJacobianType &sj) const |
|
void | GetSpatialJacobianUseComposition (const InputPointType &ipp, SpatialJacobianType &sj) const |
|
virtual void | NoCurrentTransformSet (void) const throw ( ExceptionObject ) |
|
OutputPointType | TransformPointNoCurrentTransform (const InputPointType &point) const |
|
OutputPointType | TransformPointNoInitialTransform (const InputPointType &point) const |
|
OutputPointType | TransformPointUseAddition (const InputPointType &point) const |
|
OutputPointType | TransformPointUseComposition (const InputPointType &point) const |
|
virtual void | UpdateCombinationMethod (void) |
|
virtual | ~AdvancedCombinationTransform () |
|
| AdvancedTransform () |
|
| AdvancedTransform (NumberOfParametersType numberOfParameters) |
|
virtual | ~AdvancedTransform () |
|
void | AutomaticScalesEstimation (ScalesType &scales) const |
|
| TransformBase () |
|
virtual | ~TransformBase () |
|
| BaseComponentSE () |
|
virtual | ~BaseComponentSE () |
|
| BaseComponent () |
|
virtual | ~BaseComponent () |
|
template<class TElastix>
class elastix::AffineDTITransformElastix< TElastix >
A transform based on the itk AffineDTITransform.
This transform is an affine transformation, with a different parametrisation than the usual one. It is specialised for MR-DTI applications. See also the description of the itk::AffineDTI3DTransform.
- Warning
- : the behaviour of this transform might still change in the future. It is still experimental.
The parameters used in this class are:
- Parameters:
Transform: Select this transform as follows:
(Transform "AffineDTITransform")
Scales: the scale factor for each parameter, used by the optimizer.
example: (Scales -1 -1 -1 100000000 -1 -1 -1 -1 -1 -1 -1 -1)
The scales work a bit different in this transformation, compared with the other transformations like the EulerTransform. By default, if no scales are supplied, the scales are estimated automatically. With the scales parameter, the user can override the automatically determined scales. Values smaller than or equal to 0 are ignored: the automatically estimated value is used for these parameters. Positive values override the automatically estimated scales. So, in the example above, the shear_x parameter is given a very large scale, which effectively turns off the optimization of that parameters. This might be useful in some MR-DTI application.
CenterOfRotation: an index around which the image is rotated.
example: (CenterOfRotation 128 128 90)
By default the CenterOfRotation is set to the geometric center of the image.
AutomaticTransformInitialization: whether or not the initial translation between images should be estimated as the distance between their centers.
example: (AutomaticTransformInitialization "true")
By default "false" is assumed. So, no initial translation.
The transform parameters necessary for transformix, additionally defined by this class, are: *
- Transform Parameters:
CenterOfRotation: stores the center of rotation as an index.
example: (CenterOfRotation 128 128 90)
depecrated! From elastix version 3.402 this is changed to CenterOfRotationPoint!
CenterOfRotationPoint: stores the center of rotation, expressed in world coordinates.
example: (CenterOfRotationPoint 10.555 6.666 12.345)
MatrixTranslation: the parameters as matrix and translation, so written in the same way as the parameters of the normal AffineTransform.
example: (MatrixTranslation 1 0 0 0 1 0 0 0 0.9 0.1 0.1 0.2)
This parameter is just for convenience, so that the user can compare the results between the AffineTransform and AffineDTITransform. It is not a mandatory parameter.
- See Also
- AffineDTI3DTransform
Definition at line 74 of file elxAffineDTITransform.h.